| Alternate Costumes |
| Collect all 30 Elephant Statues to unlock new costumes for all four characters. |
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| Goemon New Age Shutsudou! Reference |
| In the second town's underground prison, New Aged Goemon can be found occupying the second jail cell for his "crimes against the Goemon franchise". |
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| Mystical Ninja History Lessons |
| Also have the Game Boy Advance game Kessakusen! Ganbare Goemon 1+2 inserted. At select locations throughout the game, various characters from the Game Boy Advance game will appear and tell you things about Goemon's past. |
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| Space-Manbo Mini-game |
| Also have the Game Boy Advance game Kessakusen! Ganbare Goemon 1+2 inserted. At the mini game menu, Space-Manbo will now be unlocked. |
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