| Trophy | How to unlock |
| Air to Surface (Bronze) | Complete "Air to Surface" challenge.
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| Barrage (Bronze) | Complete "Barrage" challenge.
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| Blood Trial (Bronze) | Complete "Blood Trial" challenge.
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| Biomech Sweeper (Bronze) | Complete "Biomech Sweeper" challenge.
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| Bionically Challenged (Gold) | Complete all challenges in the game.
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| Can you dig it? (Bronze) | Complete "Can you dig it?" challenge.
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| Choke on that (Silver) | Kill Groeder - Kill him for good.
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| Close Up (Bronze) | Complete "Close Up" challenge.
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| Come Out and Play (Bronze) | Complete "Come Out and Play" challenge.
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| Cracker (Bronze) | Complete "Cracker" challenge.
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| Crowd Control (Bronze) | Complete "Crowd Control" challenge.
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| Down To Earth (Bronze) | Complete "Down To Earth" challenge.
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| Drive-by (Bronze) | Complete "Drive-by" challenge.
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| End Game (Gold) | Complete the final mission.
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| Explosive Delivery (Bronze) | Complete "Explosive Delivery" challenge.
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| Fair Fight! (Bronze) | Complete "Fair Fight!" challenge.
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| Feel the Beat, Y'all! (Bronze) | Complete "Feel the Beat, Y'all!" challenge.
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| Go-Go Bionic! (Platinum) | Complete all other Bionic Commando Trophies.
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| Headshot Bonanza (Bronze) | Complete "Headshot Bonanza" challenge.
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| I got Hard (Silver) | Finish the game in Hard mode.
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| I went Commando (Gold) | Finish the game in Commando mode.
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| Incoming! (Bronze) | Complete "Incoming!" challenge.
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| Jabber Man (Bronze) | Complete "Jabber Man" challenge.
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| Kaboom (Bronze) | Complete "Kaboom" challenge.
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| Kick In The Back (Bronze) | Complete "Kick In The Back" challenge.
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| Leap Up! (Bronze) | Complete "Leap Up!" challenge.
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| Let the Dog Out (Bronze) | Complete "Let the Dog Out" challenge.
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| Man Locked Up (Bronze) | Complete "Man Locked Up" challenge.
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| Nemesis (Bronze) | Complete "Nemesis" challenge.
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| Out of the Bush (Bronze) | Complete "Out of the Bush" challenge.
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| Poly Cruncher (Bronze) | Complete "Poly Cruncher" challenge.
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| Pull! (Bronze) | Complete "Pull!" challenge.
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| Receiving End (Bronze) | Complete "Receiving End" challenge.
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| Rocket Man (Bronze) | Complete "Rocket Man" challenge.
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| Shellshock (Bronze) | Complete "Shellshock" challenge.
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| Shoot 'Em Up! (Bronze) | Complete "Shoot 'Em Up!" challenge.
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| Slayer (Bronze) | Complete "Slayer" challenge.
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| Spence is in the Air (Bronze) | Complete "Spence is in the Air" challenge.
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| Stroke of Luck (Bronze) | Complete "Stroke of Luck" challenge.
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| Swinger (Bronze) | Complete "Swinger" challenge.
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| The Pinball Effect (Bronze) | Complete "The Pinball Effect" challenge.
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| The River (Bronze) | Complete "The River" challenge.
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| The Pitcher (Silver) | Complete "The Pitcher" challenge.
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| The Collector (Silver) | Find all collectibles in the game.
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| Torn Into Pieces (Bronze) | Complete "Torn Into Pieces" challenge.
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| Train Wreck (Bronze) | Complete "Train Wreck" challenge.
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| Two Hit Wonder (Bronze) | Complete "Two Hit Wonder" challenge.
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| Whip 'Em Good (Bronze) | Complete "Whip 'Em Good" challenge.
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| Whoo-paah! (Bronze) | Complete "Whoo-paah!" challenge.
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| Worthy Foe (Bronze) | Complete "Worthy Foe" challenge.
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