| Alternate Title Screen |
| 100% completion on the main game in 3DS, N64, and Expert mode. All gold medals included for each stage, only one for Venom. |
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| Expert Mode |
| To unlock Expert Mode you must to earn all 15 medals in Nintendo 64 mode or 3DS mode. |
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| How To Access The Alternate Missions |
On most missions of the game, there is an alternate route that can be reached at the end. These usually require fulfilling special obligations. If these are not met, then the "default" mission will follow.
| Mission | How to unlock
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| Aquas | Shoot down at least 100 enemies on Sector Y.
| | Area 6 | Can only be accessed through accomplishing the missions on either Sector Z or Macbeth.
| | Katina | Fly through the seven warp rings in Meteo; or reach it from Sector Y.
| | Macbeth | Defeat Spyborg on Sector X before it knocks out Slippy; or reach it from Solar or Zoness.
| | Sector Y | Save Falco and fly through the stone arches on Corneria.
| | Sector Z | Fly through the warp gates on Sector X; or reach it from Zoness.
| | Solar | Shoot down the Star Wolf team on Fichina before the bomb explodes; or reach it from Katina.
| | Venom (2) | Can only be reached from Area 6.
| | Zoness | Can only be reached from Aquas.
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| Main Game Medals |
During the Main Game, you can obtain medals. To obtain these medals, you must obtain a certain number of hits during the mission, listed below.
| Medal | How to unlock
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| Aquas' Main Game Medal | Get 150+ hits.
| | Area 6's Main Game Medal | Get 300+ hits.
| | Bolse's Main Game Medal | Get 150+ hits.
| | Corneria's Main Game Medal | Get 150+ hits.
| | Fichina's Main Game Medal | Get 50+ hits.
| | Katina's Main Game Medal | Get 150+ hits.
| | Macbeth's Main Game Medal | Get 150+ hits.
| | Meteo's Main Game Medal | Get 200+ hits.
| | Sector X's Main Game Medal | Get 150+ hits.
| | Sector Y's Main Game Medal | Get 150+ hits.
| | Sector Z's Main Game Medal | Get 100+ hits.
| | Solar's Main Game Medal | Get 100+ hits.
| | Titania's Main Game Medal | Get 150+ hits.
| | Venom 1's Main Game Medal | Get 300+ hits.
| | Venom 2's Main Game Medal | Get 200+ hits.
| | Zoness's Main Game Medal | Get 250+ hits.
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| Music Test |
| Beat the 'Main Game' once and it will unlock the Music Test mode. |
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| Score Attack Medals |
When you play Score Attack Mode, you can earn medals by destroying enough enemies.
| Medal | How to Unlock
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| Aquas Bronze Medal | Get 100 hits in Aquas.
| | Aquas Gold Medal | Get 160 hits in Aquas.
| | Aquas Silver Medal | Get 150 hits in Aquas.
| | Area 6 Bronze Medal | Get 180 hits in Area 6.
| | Area 6 Gold Medal | Get 400 hits in Area 6.
| | Area 6 Silver Medal | Get 300 hits in Area 6.
| | Bolse Bronze Medal | Get 120 hits in Bolse.
| | Bolse Gold Medal | Get 190 hits in Bolse.
| | Bolse Silver Medal | Get 150 hits in Bolse.
| | Corneria Bronze Medal | Get 100 hits in Corneria.
| | Corneria Gold Medal | Get 190 hits in Corneria.
| | Corneria Silver Medal | Get 150 hits in Corneria.
| | Fichina Bronze Medal | Get 40 hits in Fichina.
| | Fichina Gold Medal | Get 90 hits in Fichina.
| | Fichina Silver Medal | Get 50 hits in Fichina.
| | Katina Bronze Medal | Get 90 hits in Katina.
| | Katina Gold Medal | Get 190 hits in Katina.
| | Katina Silver Medal | Get 150 hits in Katina.
| | Macbeth Bronze Medal | Get 100 hits in Macbeth.
| | Macbeth Gold Medal | Get 180 hits in Macbeth.
| | Macbeth Silver Medal | Get 150 hits in Macbeth.
| | Meteo Bronze Medal | Get 180 hits in Meteo.
| | Meteo Gold Medal | Get 300 hits in Meteo
| | Meteo Silver Medal | Get 200 hits in Meteo.
| | Sector X Bronze Medal | Get 100 hits in Sector X.
| | Sector X Gold Medal | Get 230 hits in Sector X.
| | Sector X Silver Medal | Get 150 hits in Sector X.
| | Sector Y Bronze Medal | Get 100 hits in Sector Y.
| | Sector Y Gold Medal | Get 180 hits in Sector Y.
| | Sector Y Silver Medal | Get 150 hits in Sector Y.
| | Sector Z Bronze Medal | Get 60 hits in Sector Z.
| | Sector Z Gold Medal | Get 110 hits in Sector Z.
| | Sector Z Silver Medal | Get 100 hits in Sector Z.
| | Solar Bronze Medal | Get 50 hits in Solar.
| | Solar Gold Medal | Get 110 hits in Solar.
| | Solar Silver Medal | Get 100 hits in Solar.
| | Titania Bronze Medal | Get 80 hits in Titania.
| | Titania Gold Medal | Get 180 hits in Titania.
| | Titania Silver Medal | Get 150 hits in Titania.
| | Venom 1 Bronze Medal | Get 120 hits in Venom 1.
| | Venom 1 Gold Medal | Get 180 hits in Venom 1.
| | Venom 1 Silver Medal | Get 150 hits in Venom 1.
| | Venom 2 Bronze Medal | Get 120 hits in Venom 2.
| | Venom 2 Gold Medal | Get 220 hits in Venom 2.
| | Venom 2 Silver Medal | Get 200 hits in Venom 2.
| | Zoness Bronze Medal | Get 150 hits in Zoness.
| | Zoness Gold Medal | Get 290 hits in Zoness.
| | Zoness Silver Medal | Get 250 hits in Zoness.
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| Training And Score Attack Modes |
To unlock Training Mode and Score Attack mode, simply begin the main game and finish the training. The modes will unlock after that.
| Unlockable | How to Unlock
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| Score Attack Mode | Begin the Main Game.
| | Training Mode | Begin the Main Game.
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